Microarray Data Analysis of Illumina Data Using R/Bioconductor, Turku, 30 May - 01 June 2007

Course programme

Wednesday, May 30^th

Introduction to R - lecture and and exercise

Thursday, May 31^st

Basic statistics, QC plots and normalisation - lecture
Basics of Illumina technology and data analysis - lecture and exercise
Gene Ontology and KEGG - lecture
BioMart - lecture and exercise

Friday, June 1^st

Annotation - Exercise
Introduction to the beadarray package - exercise
Clustering - lecture and exercise
Experimental design - lecture

Teachers

Leena Kytömäki*

Asta Laiho*

Vidal Fey*

* Turku Centre for Biotechnology, Bioinformatics group

Course material for download

Presentations

FILE_AND_DATA_FORMATS.pdf	94 K
R_INTRODUCTION.pdf	3.0 M
BasicStatisticsAndNormalisation_sirukurssi_310507.pdf	1.3 M
Illumina_basic_analysis_-_Lecture.pdf	2.1 M
Jarno_Clustering_Lecture.pdf	499 K
Experimental_Design.pdf	65 K
MIAME-MAGE.pdf	133 K

Exercises

Jarno_Basics_of_R.pdf	90 K
Illumina_Exercise.pdf	139 K
BioMart_Exercise.pdf	94 K
Pre-processing_of_Illumina_data_exercise_.pdf	163 K
Jarno_Clustering_Exercise.pdf	632 K

Other Files

students.txt	446
illuminaWG6annotation.RData	3.5 M
combined.txt	2.4 M

R_Data.zip

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